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Phylogenetic testing helps trace the connection between cases


The Straits Times
https://str.sg/3UKz
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Phylogenetic testing compares different virus genomes and helps scientists deduce the index case of a Covid-19 cluster. ....

Singapore General , Mark Chen , Raymond Lin , Sebastian Maurer Stroh , Gavin Smith , Agency For Science , Infectious Diseases Programme At , National Centre For Infectious Diseases , National Public Health , Bioinformatics Institute , National Public Health Laboratory , Jurong Fishery Port , Emerging Infectious Diseases Programme , Professor Raymond Lin , National Centre , Infectious Diseases , Associate Professor Kenneth Mak , Epidemiology Unit , South East Asia , National University Hospital , குறி சென் , ரேமஂட் லின் , செபாஸ்டியன் ம Ure ரர் ஸ்ட்ரோ , கவின் ஸ்மித் , தொற்று நோய்கள் ப்ரோக்ராம் இல் , தேசிய மையம் க்கு தொற்று நோய்கள் ,

How phylogenetic testing helps experts establish links between Covid-19 cases


SINGAPORE - Phylogenetic testing compares different virus genomes and helps scientists deduce the index case of a Covid-19 cluster.
In the case of the Jurong Fishery Port cluster, the authorities were able to determine that the strains relating to the cluster were of the Delta variant and similar to what was seen in imported cases from Indonesia.
Dr Sebastian Maurer-Stroh, executive director of the Bioinformatics Institute at A Star, said a phylogenetic or family tree is created using viral mutations as markers to compare the virus genomes.
In this family tree, close relatives are grouped together and one can then see which cases had formed a cluster - in this way, one can then deduce the ancestor of a cluster, said Dr Maurer-Stroh. ....

Singapore General , Mark Chen , Raymond Lin , Sebastian Maurer Stroh , Gavin Smith , Infectious Diseases Programme At , School Singapore , National Centre For Infectious Diseases , National Public Health , Bioinformatics Institute , National Public Health Laboratory , Jurong Fishery Port , Emerging Infectious Diseases Programme , Professor Raymond Lin , National Centre , Infectious Diseases , Associate Professor Kenneth Mak , Epidemiology Unit , South East Asian , குறி சென் , ரேமஂட் லின் , செபாஸ்டியன் ம Ure ரர் ஸ்ட்ரோ , கவின் ஸ்மித் , தொற்று நோய்கள் ப்ரோக்ராம் இல் , பள்ளி சிங்கப்பூர் , தேசிய மையம் க்கு தொற்று நோய்கள் ,

New dengue strains which accounted for more than half of the cases in Singapore this year could raise risk of larger outbreak: Experts


June 28, 2021
More than 2,700 dengue cases have been reported since the start of the year.
The Straits Times
SINGAPORE - New strains of less common dengue serotypes, which are usually imported, could raise the risk of a larger outbreak, say experts.
Of the four distinct dengue virus variations, the DenV-1 and DenV-2 serotypes are most commonly seen here. The majority of infections since 2016 have been caused by DenV-2 - meaning that most recovered dengue patients would have immunity against this serotype.
However, DenV-3 and DenV-4 accounted for more than half of the dengue cases sampled here since February.
Last year saw the first DenV-3 outbreak here in three decades and a fourfold spike in DenV-4 cases, from 4.8 per cent of infections in January to 23.1 per cent by December. ....

Saudi Arabia , Lok Shee Mei , Paul Tambyah , Infectious Diseases Programme At , Asia Pacific Society Of Clinical Microbiology , Centre For Infectious Disease Epidemiology , National Environment Agency , Straits Times , Asia Pacific Society , Clinical Microbiology , Southeast Asian , Prof Tambyah , Emerging Infectious Diseases Programme , Southeast Asia , Professor Vincent Pang , Infectious Disease Epidemiology , National University , Saw Swee Hock School , Public Health , சவுதி அரேபியா , தொற்று நோய்கள் ப்ரோக்ராம் இல் , ஆசியா பெஸிஃபிக் சமூகம் ஆஃப் மருத்துவ நுண்ணுயிரியல் , மையம் க்கு தொற்று நோய் தொற்றுநோய் , நீரிணை முறை , ஆசியா பெஸிஃபிக் சமூகம் , மருத்துவ நுண்ணுயிரியல் ,

New strains could raise risk of larger dengue outbreak: Experts


The Straits Times
New strains could raise risk of larger dengue outbreak: Experts
More than 2,700 dengue cases have been reported since the start of the year.ST PHOTO: LIM YAOHUI
https://str.sg/3oGA
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Saudi Arabia , Lok Shee Mei , Paul Tambyah , Infectious Diseases Programme At , Asia Pacific Society Of Clinical Microbiology , Centre For Infectious Disease Epidemiology , National Environment Agency , Straits Times , Asia Pacific Society , Clinical Microbiology , Southeast Asian , Prof Tambyah , Emerging Infectious Diseases Programme , Southeast Asia , Professor Vincent Pang , Infectious Disease Epidemiology , National University , Saw Swee Hock School , Public Health , சவுதி அரேபியா , தொற்று நோய்கள் ப்ரோக்ராம் இல் , ஆசியா பெஸிஃபிக் சமூகம் ஆஃப் மருத்துவ நுண்ணுயிரியல் , மையம் க்கு தொற்று நோய் தொற்றுநோய் , நீரிணை முறை , ஆசியா பெஸிஃபிக் சமூகம் , மருத்துவ நுண்ணுயிரியல் ,