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Advancing gene regulatory network inference with causal discovery and graph neural networks

Gene regulatory networks (GRNs) depict the regulatory mechanisms of genes within cellular systems as a network, offering vital insights for understanding cell processes and molecular interactions that determine cellular phenotypes.
Gene Regulatory Network Inference Graph Neural Network Quantitative Biology Regulatory Network Inference Causal Discovery Integrating Graph Neural

University of Amsterdam: Four projects kick-start the Artificial Intelligence for Sustainable Molecules and Materials research programme

To kick-start the new Research Priority Area (RPA) of the Faculty of Science in "Artificial Intelligence for Sustainable Molecules and Materials" (AI4SMM), four projects have just been launched. Combining the Faculty’s strengths in computer science and sustainability research, AI4SMM aims to develop and use machine learning techniques for the design of molecules and materials for a sustainable future. The projects cover topics as diverse as metamaterials for sustainable steel, and pr...
Peter Schall Antonia Praetorius Corentin Coulais Sander Woutersen Noushine Shahidzadeh Francesca Quattrocchio

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"Minimum Entropy Principle Guided Graph Neural Networks" by Zhenyu Yang, Ge Zhang et al.

Graph neural networks (GNNs) are now the mainstream method for mining graph-structured data and learning low-dimensional node- and graph-level embeddings to serve downstream tasks. However, limited by the bottleneck of interpretability that deep neural networks present, existing GNNs have ignored the issue of estimating the appropriate number of dimensions for the embeddings. Hence, we propose a novel framework called Minimum Graph Entropy principle-guided Dimension Estimation, i.e. MGEDE, that ...
Minimum Graph Entropy Dimension Estimation Raph Embedding Raph Entropy Graph Neural Network Code Embedding
Source: uow.edu.au

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