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New search engine for single cell atlases - Vimarsana News

New search engine for single cell atlases

 E-Mail A new software tool allows researchers to quickly query datasets generated from single-cell sequencing. Users can identify which cell types any combination of genes are active in. Published in Nature Methods on 1st March, the open-access 'scfind' software enables swift analysis of multiple datasets containing millions of cells by a wide range of users, on a standard computer. Processing times for such datasets are just a few seconds, saving time and computing costs. The tool, developed by researchers at the Wellcome Sanger Institute, can be used much like a search engine, as users ...

Nanotechnology Now - Press Release: How photoblueing disturbs microscopy - Vimarsana News

Nanotechnology Now - Press Release: How photoblueing disturbs microscopy

Nanotechnology Now Home > Press > How photoblueing disturbs microscopy Confocal fluorescence images of glass surfaces coated with the cyanine dyes Alexa Fluor 647 (a) and CF660C (b) and with carborhodamine dye ATTO647N (c) after light excitation at 568 nanometres (nm). By exciting the red-absorbing dyes at 640 nm in certain areas (negative images top right), dyes are photoconverted there and it is possible to write letters on the surface that were excited at 568 nm and fluoresce at about 580 nm. The carborhodamine dye shows more efficient photobluing than the cyanine dyes. CREDIT Team Markus ...

How photoblueing disturbs microscopy - Vimarsana News

How photoblueing disturbs microscopy

 E-Mail IMAGE: Confocal fluorescence images of glass surfaces coated with the cyanine dyes Alexa Fluor 647 (a) and CF660C (b) and with carborhodamine dye ATTO647N (c) after light excitation at 568 nanometres... view more  Credit: Team Markus Sauer / University of Wuerzburg The latest developments in fluorescence microscopy make it possible to image individual molecules in cells or molecular complexes with a spatial resolution of up to 20 nanometres. However, under certain circumstances, an effect occurs that falsifies the results: the laser light used can cause very reactive oxygen ...

New technique reveals switches in RNA - Vimarsana News

New technique reveals switches in RNA

 E-Mail IMAGE: This is Dr. Danny Incarnato, a molecular geneticist at the University of Groningen, the Netherlands. In collaboration with colleagues from the University of Torino (Italy), his team developed a method... view more  Credit: University of Groningen Scientists at the University of Groningen (The Netherlands), in collaboration with colleagues from the University of Torino (Italy), have developed a method to visualize and quantify alternative structures of RNA molecules. These alternative RNA 'shapes' can have important functional relevance in viruses and bacteria. The res...

Machine-learning model helps determine protein structures - Vimarsana News

Machine-learning model helps determine protein structures

Credits: Credit: Courtesy of Ellen Zhong *Terms of Use: Images for download on the MIT News office website are made available to non-commercial entities, press and the general public under a Creative Commons Attribution Non-Commercial No Derivatives license. You may not alter the images provided, other than to crop them to size. A credit line must be used when reproducing images; if one is not provided below, credit the images to "MIT." Caption: A cryoDRGN reconstruction of the SARS-CoV-2 spike protein ...

Source: mit.edu